BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB025D08LP1|AL428376
(467 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig541 488 e-138
>3x_Contig541
Length = 1792
Score = 488 bits (237), Expect = e-138
Identities = 258/273 (94%)
Strand = Plus / Plus
Query: 1 aatacctgaaatacgatgggttgagattggtggtttggctaagtcaaacaaattaaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aatacctgaaatacgatgggttgagattggtggtttggctaagtcaaacaaattaaaaca 496
Query: 61 agaattaataaggatgaggatgagtatcaaatgtctgtgattccattcctacatatatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agaattaataaggatgaggatgagtatcaaatgtctgtgattccattcctacatatatat 556
Query: 121 atatatatatatatagvbbmvnmnavagtgttttagtgtgtgaaaaaaaaatagtgctag 180
|||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 557 atatatatatatatagattaaaataaagtgttttagtgtgtgaaaaaaaaatagtgctag 616
Query: 181 taagtgcgagaaagcaaaaaaaaaaaaaaaagggacggaacycyacatagaaaaagctca 240
||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct: 617 taagtgcgagaaagcaaaaaaaaaaaaaaaagggacggaactctacatagaanaagctca 676
Query: 241 acaaattgtcctggaccggragaagatcactca 273
||| |||||||||||||| |||||||||||||
Sbjct: 677 acanattgtcctggaccgaaagaagatcactca 709
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.43 0.717 1.35
Gapped
Lambda K H
1.43 0.717 1.35
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,463
Number of Sequences: 1807
Number of extensions: 20463
Number of successful extensions: 6878
Number of sequences better than 1.0e-20: 1
length of query: 467
length of database: 10,358,551
effective HSP length: 15
effective length of query: 452
effective length of database: 10,331,446
effective search space: 4669813592
effective search space used: 4669813592
T: 0
A: 40
X1: 5 (10.3 bits)
X2: 14 (28.8 bits)
S1: 11 (23.1 bits)
S2: 48 (99.3 bits)